Genomics module

Genomics
GENOMICS

If your current PACS-VNA-EHR system does not support Genomics, Kanteron Systems can supply your healthcare delivery organization with a module that includes:

  • A next-generation web-based 2D and 3D genome browser
    • Real time navigation through chromosomes and karyotypes, representing different types of data over many types of genomic information
    • Data is rendered using SVG directly in the client side. No images are generated in the server and sent to the client (which means a faster server and more cacheable data)
    • Numerous pre-configured tracks such as genes, transcripts, SNPs, mutations, miRNA targets, TFBS, etc.
    • Written in Javascript, and makes use of open standards such as HTML5 or CSS3
    • Zero-footprint: it runs in any modern web browsers without the installation of any Flash plug-in, Java Applet or anything else
    • Very fast, smooth scrolling and dynamic response to user requests
    • Use remote or local files, DAS servers or any other data via web service
    • Import data and NGS files (BAM, VCF, GFF, BED…)
    • Export data in JSON format
    • Select sequencing areas and zoom-in to visualize histograms
    • Search genes, SNPs, variants, exomes and transcriptomes
    • One-click link to further curated info on a specific position
    • Load and work with cellbase and DAS
    • History of visited positions
    • Download raw (.ban) data to process in other bioinformatic tools
  • Report viewing and report generating module
  • Integration with EHR (Electronic Medical Records) for Clinical Genomics
  • Integration with LIMS (Laboratory Information Management Systems) for on-site and external Laboratories
  • Integration with eCRF o CDM for Clinical Trials
  • Annotation
  • Collaboration